If the atom parameter types are are the same in each ligand, only a single CMAP definition should be needed; there's only one CMAP definition for the backbone heavy atoms of amino acid polymers.
There does seem to be an issue, but I cannot tell exactly what it might be from the data included so far. The only thing I noticed was this message--
PARRDR> WARNING: ATOMS IN PHI1 (CMAP) STOP DONT EXIST
PARMIO> NONBOND, HBOND lists and IMAGE atoms cleared.
and the fact that the .prm file was terminated incorrectly with a STOP statement instead of an END statement. Fix that and try again.
