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Joined: Jul 2021
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What do the terms "BB" and "SC" stand for in "-DPOSRES_FC_BB" and "-DPOSRES_FC_SC" in the define constraints line in mdp files downloaded for GROMACS from CHARMM-GUI Input Generator?

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I believe now that BB stands for Backbone and SC stands for side chains. Both referring to a protein in the system and the constraint command is present in the mdp files whether there is an actual protein in the system or not.
Hope this is helpful.

Last edited by yarasayed; 07/27/21 11:04 PM.

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