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Meaning of BB and SC in DPOSRES_FC_
#38311 07/26/21 10:56 PM
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What do the terms "BB" and "SC" stand for in "-DPOSRES_FC_BB" and "-DPOSRES_FC_SC" in the define constraints line in mdp files downloaded for GROMACS from CHARMM-GUI Input Generator?

Re: Meaning of BB and SC in DPOSRES_FC_
yarasayed #38315 07/27/21 11:04 PM
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I believe now that BB stands for Backbone and SC stands for side chains. Both referring to a protein in the system and the constraint command is present in the mdp files whether there is an actual protein in the system or not.
Hope this is helpful.

Last edited by yarasayed; 07/27/21 11:04 PM.

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