hey users,
I want to orient my protein according to ppm server.But in orientation column i cannot see "use ppm to align" link anymore. Any suggestion for that. I tried using ppm server to generate pdb first but output file considering some of them as heteroatoms leading to gap formation in protein pdb.

If i try to orient it by myself. will protein adjust its structure during equillibriation? Right orientation is crucial for me as, protein pore's diameter is changing.

Last edited by yogesh; 09/30/19 09:59 AM.