I want to orient my protein according to ppm server.But in orientation column i cannot see "use ppm to align" link anymore. Any suggestion for that. I tried using ppm server to generate pdb first but output file considering some of them as heteroatoms leading to gap formation in protein pdb.
If i try to orient it by myself. will protein adjust its structure during equillibriation? Right orientation is crucial for me as, protein pore's diameter is changing.
Edited by yogesh (09/30/19 05:59 AM)