I am encountering a problem with the Martini to all-atom converter tool in Charmm-gui. Specifically, whenever I try to convert membranes containing cardiolipins, it packs cardiolipins separately from other lipids, and clusters them into a small membrane, far from the initial position of the original membrane.
Membranes without cardiolipins are backmapped correctly.
Do you know why this happens and/or how to solve this problem?
Thank you and I wish you a nice day