I installed MMTSB tool set and was following the tutorial for MMPB(GB)/SA binding energy calculations.
After I run minCHARMM.pl I don't get any output file. yapww.min.pdb is created but it is empty. I don't get any error messages either.
minCHARMM.pl -par dielec=rdie,epsilon=4,minsteps=50 \
-log min.log yapww.pdb > yapww.min.pdb
min.log just says
Any input would be greatly appreciated.