Previous Thread
Next Thread
Print Thread
Joined: Nov 2008
Posts: 54
V
varsha Offline OP
Forum Member
OP Offline
Forum Member
V
Joined: Nov 2008
Posts: 54
I want to study the interaction of protein and ice model (TIP4P/2005) at temperature 263K. Is it reasonable to simulate ice crystal with harmonic constraint at 263K?

As it is stated in article Vega et al., (2008, Faraday discussion,pg141), "it is possible to simulate ices up to temperatures about 80 K above the melting point", can I proceed with TIP4P/2005 ice model at 263K?

Thanks in advance for any suggestions.

Varsha

Joined: Sep 2003
Posts: 8,637
Likes: 25
rmv Online Content
Forum Member
Online Content
Forum Member
Joined: Sep 2003
Posts: 8,637
Likes: 25
Note that TIP4P/2005 has not been extensively tested with other CHARMM force fields, which have all been developed wrt. solvation in TIP3P water.

You may need to continue your literature research on the TIP4P/2005 water model, or run some water simulations yourself. You may also need to evaluate the impact of switching water models, perhaps using some small peptides.


Rick Venable
computational chemist

Joined: Nov 2008
Posts: 54
V
varsha Offline OP
Forum Member
OP Offline
Forum Member
V
Joined: Nov 2008
Posts: 54
Thank you for your reply.


Moderated by  lennart, rmv 

Link Copied to Clipboard
Powered by UBB.threads™ PHP Forum Software 7.7.5
(Release build 20201027)
Responsive Width:

PHP: 7.3.31-1~deb10u3 Page Time: 0.010s Queries: 20 (0.007s) Memory: 0.7365 MB (Peak: 0.7802 MB) Data Comp: Off Server Time: 2023-03-23 14:03:27 UTC
Valid HTML 5 and Valid CSS