Topic Options
#15475 - 09/07/07 05:24 PM Command line too long: truncated.
prakash Offline
Forum Member

Registered: 10/04/05
Posts: 206
I am using the *.pot in aix cluster it is giving an error while reading the *.pot file the error is

command line too long: truncated.

whereas it has no problem with lc cluster
could you please tell me how tos e solve this error

! Read in coordinates
open unit 1 read formatted name 2ech-water.crd
read coor card unit 1
close unit 1



! Read in solvent boundary potential

OPEN UNIT 1 READ FORMatted NAME bp30.pot
SBOUnd READ UNIT 1
close unit 1



TITLE> *>>>> CHARMM22 ALL-HYDROGEN PARAMETER FILE FOR PROTEINS <<<<<<<<<
TITLE> *>>>>>>>>>>>>>>>>>>>>> DECEMBER 2003 <<<<<<<<<<<<<<<<<<<<<<<<<<<<
TITLE> * ALL COMMENTS TO ADM JR. VIA THE CHARMM WEB SITE: www.CHARMM.ORG
TITLE> * PARAMETER SET DISCUSSION FORUM
TITLE> *
PARMIO> NONBOND, HBOND lists and IMAGE atoms cleared.

CHARMM> close unit 1
VCLOSE: Closing unit 1 with status "KEEP"

CHARMM>

CHARMM> ! Read PSF file
CHARMM> open unit 1 card read name 2ech-water.psf
VOPEN> Attempting to open::2ech-water.psf::
OPNLGU> Unit 1 opened for READONLY access to 2ech-water.psf

CHARMM> read psf card unit 1
MAINIO> Protein structure file being read from unit 1.
TITLE> * SOLVATED ECHESTATIN
TITLE> * DATE: 5/23/ 7 17:18:31 CREATED BY USER: saravana
TITLE> *
PSFSUM> PSF modified: NONBOND lists and IMAGE atoms cleared.
PSFSUM> Summary of the structure file counters :
Number of segments = 2 Number of residues = 3379
Number of atoms = 10703 Number of groups = 3531
Number of bonds = 10713 Number of angles = 4630
Number of dihedrals = 1896 Number of impropers = 127
Number of cross-terms = 0
Number of HB acceptors = 3405 Number of HB donors = 94
Number of NB exclusions = 0 Total charge = 1.00000

CHARMM>

CHARMM> ! Read in coordinates
CHARMM> open unit 1 read formatted name 2ech-water.crd
OPNLGU> Unit already open. The old file will be closed first.
VCLOSE: Closing unit 1 with status "KEEP"
VOPEN> Attempting to open::2ech-water.crd::
OPNLGU> Unit 1 opened for READONLY access to 2ech-water.crd

CHARMM> read coor card unit 1
SPATIAL COORDINATES BEING READ FROM UNIT 1
TITLE> * ECHESTATIN STRUCTURE WITH HYDROGENS
TITLE> * DATE: 5/23/ 7 17:18:31 CREATED BY USER: SARAVANA
TITLE> *

CHARMM> close unit 1
VCLOSE: Closing unit 1 with status "KEEP"

CHARMM>

CHARMM>

CHARMM>

CHARMM> ! Read in solvent boundary potential
CHARMM>

CHARMM> OPEN UNIT 1 READ FORMatted NAME bp30.pot
VOPEN> Attempting to open::bp30.pot::
OPNLGU> Unit 1 opened for READONLY access to bp30.pot

CHARMM> SBOUnd READ UNIT 1
SBREAD: boundary potential spline being read from unit 1

***** LEVEL -1 WARNING FROM <RDCMND> *****
***** Command line too long: truncated.
******************************************

Top
#15476 - 09/07/07 09:26 PM Re: Command line too long: truncated. [Re: prakash]
rmv Online   content

Forum Member

Registered: 09/17/03
Posts: 8373
Loc: 39 03 48 N, 77 06 54 W
This error message is most likely an OS-dependent feature, related to the maximum allowed length of a character string. The script may not work on an AIX system without source code changes, or possibly changes to the .pot file itself.

Top

Moderator:  John Legato, lennart