Previous Thread
Next Thread
Print Thread
Page 1 of 2 1 2
#32077 06/12/13 12:54 PM
Joined: Jun 2013
Posts: 1
K
kanin Offline OP
Forum Member
OP Offline
Forum Member
K
Joined: Jun 2013
Posts: 1
Dear Charmm users,

I'm now trying to prepare my membrane proteins using charmm-gui membrane builder. I tried to upload my own PDB file but it doesn't work. I get an error saying "Submit valid PDB ID or upload custom PDB file". I don't know what wrong with it. I used the same PDB file before and everything was fine, no problems at all. But now I just want to change the lipid type so I tried to upload the same pdb file as before but it doesn't work.

I also tried the other modules in charmm-gui to upload the pdb file but it also doesn't work, got the same error.

Are there some problems with charmm-gui server at the moment or are there any way to solve this problems?

Thank you so much in advance for any helps and suggestions.

Best Regards,
Kanin

Joined: Jan 2009
Posts: 161
S
Forum Member
Offline
Forum Member
S
Joined: Jan 2009
Posts: 161
Sorry about that. The disk space was full. It should be working all right now.

Sunhwan

Joined: Oct 2007
Posts: 26
M
Forum Member
Offline
Forum Member
M
Joined: Oct 2007
Posts: 26
I'm currently getting the same error. Anybody else also having problems?

Alexander

Joined: Mar 2013
Posts: 6
X
Forum Member
Offline
Forum Member
X
Joined: Mar 2013
Posts: 6
Could you please try again?

Thanks,
Xi


Center for Bioinformatics
The University of Kansas
Joined: Oct 2007
Posts: 26
M
Forum Member
Offline
Forum Member
M
Joined: Oct 2007
Posts: 26
Works now. Thanks a lot!

Alexander

Joined: Jul 2010
Posts: 6
D
Forum Member
Offline
Forum Member
D
Joined: Jul 2010
Posts: 6
Is anyone else having this problem now? After a few days of not working, it worked for me yesterday, but today it is not.

Dan

Joined: Mar 2013
Posts: 6
X
Forum Member
Offline
Forum Member
X
Joined: Mar 2013
Posts: 6
Please try again.

Thanks,
Xi


Center for Bioinformatics
The University of Kansas
Joined: Jul 2010
Posts: 6
D
Forum Member
Offline
Forum Member
D
Joined: Jul 2010
Posts: 6
Works. Thanks.
Dan

Joined: Jul 2010
Posts: 6
D
Forum Member
Offline
Forum Member
D
Joined: Jul 2010
Posts: 6
I'm having a different sort of problem presently with glycan reader. If the file is downloaded directly from RCSB, it is downloaded and processed completely. However if the same file is instead uploaded from my computer, it appears to be read correctly but the generation of the parameter files fails.

The error message says that "unit 10 cannot be opened as zzz_carb.crd" and that "open not possible". I've tried this with a couple of different files with similar results.

Any suggestions?
Thanks,
Dan

Joined: Jan 2009
Posts: 161
S
Forum Member
Offline
Forum Member
S
Joined: Jan 2009
Posts: 161
I've tried uploading a PDB and it seems working. Is is possible for you to share your PDB file so I can reproduce your error?

Thanks,
Sunhwan

Page 1 of 2 1 2

Moderated by  lennart, rmv, wonpil 

Link Copied to Clipboard
Powered by UBB.threads™ PHP Forum Software 7.7.5
(Release build 20201027)
Responsive Width:

PHP: 7.3.31-1~deb10u1 Page Time: 0.013s Queries: 35 (0.008s) Memory: 0.7776 MB (Peak: 0.8676 MB) Data Comp: Off Server Time: 2022-10-01 01:01:27 UTC
Valid HTML 5 and Valid CSS