CHARMM Development Project
Posted By: yarasayed Meaning of BB and SC in DPOSRES_FC_ - 07/26/21 10:56 PM
What do the terms "BB" and "SC" stand for in "-DPOSRES_FC_BB" and "-DPOSRES_FC_SC" in the define constraints line in mdp files downloaded for GROMACS from CHARMM-GUI Input Generator?
Posted By: yarasayed Re: Meaning of BB and SC in DPOSRES_FC_ - 07/27/21 11:04 PM
I believe now that BB stands for Backbone and SC stands for side chains. Both referring to a protein in the system and the constraint command is present in the mdp files whether there is an actual protein in the system or not.
Hope this is helpful.
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