Re: Membrane builder not making correct thickness
04/09/20 10:36 PM
Thank you for the quick response! I must admit I did read it but clearly not carefully enough! My apologies.
My plan is to use whichever lipid length covers the TM helices most completely; other than that I didn't have a strong preference other than it being something typically in a eukaryotic membrane.
The plane that is built in Step 1 already does not cover the the TM helices; when the program builds in the membrane in later steps, is it not constrained to the plane that is drawn in step 1? So, it could build the bilayer past the initial plane that is drawn, or will it attempt to pack it all in there?