CHARMM c35b1 Documentation

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c35b1 Documentation

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Quick Start

• How to use CHARMM (usage.doc)
• Read and write data (io.doc)
• INFO starting point (charmm.doc)

Lists

• Alphabetical Index of .doc Files
• Full Alphabetic Table
• Menu Item Extract of .doc Files
• First 32 Lines of Each .doc File

Useful .doc Files

• constraints & restraints (cons.doc)
• coordinate manipulation and analysis (corman.doc)
• time series, correlation functions (correl.doc)
• dynamics & trajectory manipulation (dynamc.doc)
• energy commands (energy.doc)
• X11, GL & PostScript graphics (graphx.doc)
• internal coordinate manipulation and analysis (intcor.doc)
• energy minimization (minimiz.doc)
• miscellaneous [but very useful] commands (miscom.doc)
• nonbond options (nbonds.doc)
• atom selection (select.doc)